PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma20g00630.1
Common NameZOSMA_20G00630
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 364aa    MW: 40162.7 Da    PI: 4.7648
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma20g00630.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-19133182255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr+++ +grW+AeIrdp     r  r +lg++ taeeAak +++a+ +l+g
  Zosma20g00630.1 133 KFRGVRQRP-WGRWAAEIRDPA----RrCRLWLGTYNTAEEAAKVYDNAAIQLRG 182
                      89*******.**********83....349************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-29132190IPR001471AP2/ERF domain
CDDcd000183.98E-31133191No hitNo description
PROSITE profilePS5103223.604133190IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-20133190IPR016177DNA-binding domain
PfamPF008473.4E-13133182IPR001471AP2/ERF domain
SMARTSM003802.2E-35133196IPR001471AP2/ERF domain
PRINTSPR003672.2E-9134145IPR001471AP2/ERF domain
PRINTSPR003672.2E-9156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MMDRDYYLPA TKYTVHRSET TMFQNPKHCG TPTTTLRLSF TDPDATDSSD EEDVLAPRRQ  60
IVKHYVHQIT LEPRPFYDHN DDQNNNNAVN GARKPLRNGG GKAGKQIRKK KVVPVNGNNA  120
IGVTSSLSAK DRKFRGVRQR PWGRWAAEIR DPARRCRLWL GTYNTAEEAA KVYDNAAIQL  180
RGPDAMTNFA NPKELVTTTT ATTATPNTAS STTSAVYESA DESHSSPTSV LRYENTTDSS  240
LILPVPTPAS TSSKASQKDK EGCCGFLELG ELELLPLELE DTMPLFSDFM GLDDPMWFDK  300
NTMMTTITTS NNNNTNNGYN GGLDGLDDLE LDDMFLGPNA MDLDDCFLPS ISDIFSTDPL  360
PVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20129189162ATERF1
3gcc_A3e-20129189162ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PMY40.0A0A0K9PMY4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-40cytokinin response factor 4