PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma210g00090.1
Common NameZOSMA_210G00090
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 433aa    MW: 49060.7 Da    PI: 8.4099
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma210g00090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.13e-18182274390
              FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       Y  Y++++GFsv+  +++++    + +++ ++r++ Cskeg+ +  +  +  +rr++a++r+gC a++k+++e  +++w v++++leHnH+l 
  Zosma210g00090.1 182 YYGYSSKMGFSVSLGSTNYKtskdDGKKNLVMRRLLCSKEGTVDLLHPPKLGKRRKNAVSRCGCCASIKIRREGmSEVWIVKHIVLEHNHPLI 274
                       899*********98776655454444567899***********999998899**********************9****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-15182274IPR004330FAR1 DNA binding domain
PfamPF105512.3E-6396431IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MTLNSLNVID QSSSLQQPNI EPQNTIHFSP NSSSIYITPP PYLPLHGQPL IPSTQCSRPQ  60
CNVSIDFYSI QTEKPSECNP NETHCNVQCS RINDFPLIRN ANYVPHQNHD TPLDNLRTLI  120
SSKNNDVTRL PNAITSSVNA SPSFFVPKQP TDTNSSSDNV KLNSPPTFSQ IYSSYSDALD  180
QYYGYSSKMG FSVSLGSTNY KTSKDDGKKN LVMRRLLCSK EGTVDLLHPP KLGKRRKNAV  240
SRCGCCASIK IRREGMSEVW IVKHIVLEHN HPLITPSKVQ FLPINRSISS TSRLFFQFLS  300
EVNVPVSQQT AYFSTQFGGI EHMGCMQLNI SNMCRDDRVD LKNYDVDLLV EEFEMKKSVQ  360
PDFFYSIVKD SSGRPKHVFW VDFIMIQHFK LFENAVTFDT TYKTNVYSLI FEMFCGVNHH  420
RKTVIFGSAF LR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229235PKLGKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PMR70.0A0A0K9PMR7_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-33FAR1-related sequence 5