PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma213g00150.1
Common NameZOSMA_213G00150
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 187aa    MW: 21428 Da    PI: 9.8482
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma213g00150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.61.2e-143861290
              FAR1 12 Fsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                      Fsvr  +++++    + ++  ++r++ Cske   +  +  +  +rr++a++r+gC a++k+k++  +++w v++++leHnH+l+
  Zosma213g00150.1  3 FSVRLGSTNYKtskeDGKKFLVMRRLLCSKEEIVDLLHPPKLGKRRKNAVSRCGCCASIKIKRKAmSEVWIVKNIVLEHNHPLT 86
                      77777655444343234455789*********99998888899**********************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-11386IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSFSVRLGST NYKTSKEDGK KFLVMRRLLC SKEEIVDLLH PPKLGKRRKN AVSRCGCCAS  60
IKIKRKAMSE VWIVKNIVLE HNHPLTTPSK VWFLSINRSI SSTSILLFQS LSEVNVSVSQ  120
QTAYFSTQVS VIEHMKYTQL DISNMCRDDR VDMKNYDVDL LVEEFEMKKS AQPDFFIPLS  180
KIRMVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14147PKLGKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PKI81e-135A0A0K9PKI8_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-13FAR1-related sequence 5