PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma214g00210.1
Common NameZOSMA_214G00210
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GeBP
Protein Properties Length: 1117aa    MW: 128110 Da    PI: 5.1467
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma214g00210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573401.1e-12169262495
            DUF573   4 qrlwseeDeivlLqGlidfka.ktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                       + +w+ +D+i+ ++Gl +f++ ++g   s++ d d+fy+ ++ +++ ++ ++q+  K+r+ K K +  ++ + +g++++    ++q  fe+ k
  Zosma214g00210.1 169 KGVWTIQDNISCIKGLFEFRMsHNGNdpSSKYDYDEFYNLIRVNLHTDFDRTQVRRKLRSVKAKCNAYMEMIINGNDVQN-LGSNQYFFEWLK 260
                       669****************7615677545555***************************************999999654.456688888887 PP

            DUF573  94 ki 95 
                         
  Zosma214g00210.1 261 NA 262
                       65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.7E-9171247IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 1117 aa     Download sequence    Send to blast
MGVKKKSKRP RRHFSTYQSQ ILESDEIRKD AQPVKNVESD KKKSDCDSDS DSVSHFCIAP  60
SLSNPVVDSF DSGKSSDDTN GNNNSEKISK KNTSTDGSFD SRKWSNNTNE NKISEKISTE  120
KKRSGAAHGM EIDDKSVSGI FCSGDCKQEK EEEESGMIPS GSRNKKQNKG VWTIQDNISC  180
IKGLFEFRMS HNGNDPSSKY DYDEFYNLIR VNLHTDFDRT QVRRKLRSVK AKCNAYMEMI  240
INGNDVQNLG SNQYFFEWLK NAFEKKQKLL SESLGDAEVI QGRLYSKNLD NSEAKNDTRK  300
RNEIPMESLD DGEAKNDTHE RKDIPMESLD DSVAKNDTRE RKEIPAEVLD DSVAKEKNLR  360
NKLPTESFGN GEDTEKEIGL RKKLRTESFD NGEAKEDESS RKKLPAMSFD DSAMEKEVQE  420
NPHTKSFGDS EMVEDELERL FAKSLNDSEM EEEKKLLTKS FDDGAIKDKE KKLLTENLDG  480
GEMEEERENK KLLTNSLDGS EMEKEKLLTN SLDGSEMEKK KLLTENLDGG EMEEERENKK  540
LLTNSLDGSE MEKEKLLTNS LDGSEMEKKK LLTENLDGGE MEEERENKKL LTNSLDGSEM  600
EKEKLLTNSL DGSEMEKKKL LTENLDGGEM EEERENKKLL TNSLDGSEME KEKLLTNSLD  660
GSEMEKKLLT ESLDDGEVEV GREKNKDGKR LLTKSLSLDD CVVVLELDME NDKKKVVTES  720
LNVSEIEEGN DDLLKERLYD GKVDIGREND KDKKKLLTES LSVDDSEKEK KNLRTKSTDD  780
GEVHEERRKK KLKSSLHDGV KKENNLLTKS ANNGEIREKR RKKLKCSLDD GEKEKKNLLT  840
KSVDDGEVQE ERRKKKKAKC SFDDGEEKKN LLTKNVDDGE VQEERRRKKK KLKCSLDDGE  900
KEKKNLLTKS VDDGEVQEER RRKKKAKCSF DDGKEKKNLL TKSVDDGEVQ EERRRKKKKE  960
KCNFDNGEEK KNLLTKSVDD GEALDEKRRR KKKLKCSLRG GGEERENILT ESVDNSEERR  1020
KKLKCSLEDE SPIRIVGGRR SDLLCNVIDQ MVDSNYQKLM NVEMKMAIGR LKPEKIANLE  1080
KKIKKHNDAQ FRIYRQWKEL ENEVFEAIYN EREEGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379385LRKKLRT
2850856ERRKKKK
3952959RRRKKKKE
4953959RRKKKKE
5954959RKKKKE
6954960RKKKKEK
7985993EKRRRKKKL
8986992KRRRKKK
9988993RRKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PK420.0A0A0K9PK42_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25650.15e-08DNA-binding storekeeper protein-related transcriptional regulator