PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma214g00260.1
Common NameZOSMA_214G00260
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 191aa    MW: 21274.6 Da    PI: 10.4289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma214g00260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26.1e-081461554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STC.HHHHHHHHHHHHHH CS
               HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsK.aeiLekAveYIksL 54
                       + +Er+RR +++s   +L +l+Pk+    s  lsK  + L +A+eYIk++
  Zosma214g00260.1 14 RKSVERNRRLHMKSLCLKLFSLIPKN---ASSTLSKqRDHLNLATEYIKEM 61
                      5789*********************8...6777777369**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.56E-4766No hitNo description
PROSITE profilePS508889.978961IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-101076IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-91175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-51561IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MKKKSFEEAR KLDRKSVERN RRLHMKSLCL KLFSLIPKNA SSTLSKQRDH LNLATEYIKE  60
MKKKVEGLKR RKKQMLASGA GAGASSSSSG DDHTSSSEKK DVIQKLPIIE IRQVNDSIAE  120
IVVICGADIR SVFYQLINIV EEEGAQVVNA SSAVVGDKIF HTVHSNIKSP RIGLDSSRML  180
ERLKNLVQEE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PK451e-134A0A0K9PK45_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-18bHLH family protein