PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma215g00430.1

Common Name

ZOSMA_215G00430

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 234aa MW: 26532.8 Da PI: 7.9437

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma215g00430.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.9	4e-19	52	141	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y YA ++GF+v + ++k + ++e++ r+f Csk+g++ +++++ +e+++r+ ++r gC a++ +++++ + w+v ++ ++HnH+++ Zosma215g00430.1 52 YMGYAGNIGFNVHMGSTKMN--DHEMVGRRFLCSKQGYALSTDTAnnvNERKHRRIRNSRSGCLAMIYISLDRsTRLWRVVNFIEDHNHPMV 141 99***********98887..9999********998888777777777788899********99899***********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.3E-17	52	141	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MHISTEQLQS HNVDQDNIHS EPNTETIGSS STPYIPEVGQ QFNSHDEAGD AYMGYAGNIG 60 FNVHMGSTKM NDHEMVGRRF LCSKQGYALS TDTANNVNER KHRRIRNSRS GCLAMIYISL 120 DRSTRLWRVV NFIEDHNHPM VTPSKRRYLP VNRVITPLSR ALFKSLNTSN ISPSDQYCVA 180 AQEAGGFDHM QYTPSDLSNM RCDDRCNIIQ RDADLLNYFK KKDKIIGLLL LVY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PK21	1e-176	A0A0K9PK21_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-18	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma215g00430.1