PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma215g00450.1

Common Name

ZOSMA_215G00450

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 195aa MW: 22461.4 Da PI: 10.0027

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma215g00450.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.6	9.9e-19	2	89	5	90
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 YA ++GF+vr+ ++k + ++e++ r+f Csk+g++ +++++ +e+++r+ ++r gC a++ +++++ + w+v ++ ++HnH+++ Zosma215g00450.1 2 GYAGNIGFNVRMGSTKMN--DHEMVGRRFLCSKQGYALSTDTAnnvNERKHRRIRNSRSGCLAMIYISLDRsTRLWRVVNFIENHNHPMV 89 5**********98887..9999********998888777777777788899********99899***********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-16	2	89	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MGYAGNIGFN VRMGSTKMND HEMVGRRFLC SKQGYALSTD TANNVNERKH RRIRNSRSGC 60 LAMIYISLDR STRLWRVVNF IENHNHPMVT PSKRRYLPVN RVITPLSRAL FKSLNTSNIS 120 PSDQYCVAAQ EAGGFDHMQY TPSDLSNMRR DDRCNIIQRD ADLLIDLFQE KKIKSSDYYY 180 SFTRHDNGNF LSFT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PME4	1e-144	A0A0K9PME4_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-18	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma215g00450.1