PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma217g00090.1
Common NameZOSMA_217G00090
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family SBP
Protein Properties Length: 111aa    MW: 12939.7 Da    PI: 7.7304
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma217g00090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP35.23.2e-115324976
                      EEETTT--SS--S-STTTT-------S- CS
               SBP 49 fhelsefDeekrsCrrrLakhnerrrkk 76
                      fh l++fDe+krs rr+L++hn+rrr+ 
  Zosma217g00090.1  5 FHILKDFDEGKRSRRRKLEHHNKRRRRG 32
                      9*************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.024132IPR004333Transcription factor, SBP-box
PfamPF031105.5E-5431IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.81E-8433IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MSGFFHILKD FDEGKRSRRR KLEHHNKRRR RGPNADQKVL DEKENNSIEI IHIEEVVQDD  60
EQSKDGTSLV NVKMEVQVPK LHYVYPVLFE AGKSIEIFAC GSNLFQPNFW *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11830RRKLEHHNKRRRR
21930RKLEHHNKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PK325e-76A0A0K9PK32_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.34e-12squamosa promoter binding protein-like 7