PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma217g00110.1
Common NameZOSMA_217G00110
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family SBP
Protein Properties Length: 155aa    MW: 18417 Da    PI: 7.145
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma217g00110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP392.1e-126334976
                      EEETTT--SS--S-STTTT-------S- CS
               SBP 49 fhelsefDeekrsCrrrLakhnerrrkk 76
                      fh l++fDe+k+sCrr+L++hn+rrr+ 
  Zosma217g00110.1  6 FHILKDFDEGKHSCRRKLEHHNKRRRRG 33
                      9*************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.434133IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-9634IPR004333Transcription factor, SBP-box
PfamPF031104.7E-7632IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MIDGFFHILK DFDEGKHSCR RKLEHHNKRR RRGPNADQKV LDEKENNSIE IIHIEEVVQD  60
DEQSKGRMSF KLYDWNPADF PRRLRRQIFQ WLDKEGMMYD NTLFQILQDG TSLVNVKMEV  120
QVPKLHYVYP VLFEAGKSIE IFACGSNLFQ PNFW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11931RRKLEHHNKRRRR
22031RKLEHHNKRRRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021635653.16e-38squamosa promoter-binding-like protein 7 isoform X7
SwissprotQ6I5762e-25SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A0K9PK251e-112A0A0K9PK25_ZOSMR; Uncharacterized protein
STRINGXP_010666331.14e-34(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.33e-24squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]