PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma218g00060.1

Common Name

ZOSMA_218G00060

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YC

Protein Properties

Length: 89aa MW: 10284.9 Da PI: 9.3162

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma218g00060.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	61.7	1.5e-19	6	70	8	71
NF-YC 8 kqiekatdfknhelPlarikkilkadedv.kmisaeaPvllskacelfileltlrswlhaeenkr 71 ++iek+ dfkn+++ l +ikki+ +d dv +mi e+P+++ + celfil+ t +sw +ee + Zosma218g00060.1 6 QEIEKKMDFKNNSFSLKKIKKIITSDGDVdHMINREVPIIFVRVCELFILKHTQQSWSYTEERTN 70 679************************669***************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.7E-15	10	73	IPR009072	Histone-fold
SuperFamily	SSF47113	7.81E-8	10	72	IPR009072	Histone-fold
Pfam	PF00808	1.3E-6	20	68	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MVNETQEIEK KMDFKNNSFS LKKIKKIITS DGDVDHMINR EVPIIFVRVC ELFILKHTQQ 60 SWSYTEERTN GKLSGGTMLR LSHRPLTC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-17	6	67	5	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269\|PubMed:25105952}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002284851.1	2e-17	PREDICTED: nuclear transcription factor Y subunit C-9 isoform X5
Refseq	XP_007030882.1	2e-17	PREDICTED: nuclear transcription factor Y subunit C-9
Refseq	XP_007030884.1	2e-17	PREDICTED: nuclear transcription factor Y subunit C-9
Refseq	XP_007030888.1	2e-17	PREDICTED: nuclear transcription factor Y subunit C-9
Refseq	XP_007030889.1	2e-17	PREDICTED: nuclear transcription factor Y subunit C-9
Refseq	XP_008450660.1	2e-17	PREDICTED: nuclear transcription factor Y subunit C-9
Refseq	XP_010659833.1	2e-17	PREDICTED: nuclear transcription factor Y subunit C-9 isoform X5
Refseq	XP_011659897.1	2e-17	PREDICTED: nuclear transcription factor Y subunit C-9
Refseq	XP_011659898.1	2e-17	PREDICTED: nuclear transcription factor Y subunit C-9
Refseq	XP_016900989.1	2e-17	PREDICTED: nuclear transcription factor Y subunit C-9
Refseq	XP_017977847.1	2e-17	PREDICTED: nuclear transcription factor Y subunit C-9
Refseq	XP_018843712.1	1e-17	PREDICTED: nuclear transcription factor Y subunit C-3-like
Refseq	XP_018858164.1	9e-18	PREDICTED: nuclear transcription factor Y subunit C-9-like, partial
Refseq	XP_021283355.1	2e-17	nuclear transcription factor Y subunit C-9
Refseq	XP_021283357.1	2e-17	nuclear transcription factor Y subunit C-9
Refseq	XP_021283358.1	2e-17	nuclear transcription factor Y subunit C-9
Refseq	XP_021283359.1	2e-17	nuclear transcription factor Y subunit C-9
Refseq	XP_021283360.1	2e-17	nuclear transcription factor Y subunit C-9
Refseq	XP_021283361.1	2e-17	nuclear transcription factor Y subunit C-9
Refseq	XP_021283362.1	2e-17	nuclear transcription factor Y subunit C-9
Swissprot	Q8L4B2	3e-17	NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBL	A0A0K9PM35	5e-59	A0A0K9PM35_ZOSMR; Uncharacterized protein
STRING	Aquca_017_00420.1	8e-17	(Aquilegia coerulea)
STRING	VIT_14s0128g00250.t01	7e-17	(Vitis vinifera)
STRING	EOY11389	8e-17	(Theobroma cacao)
STRING	XP_008450660.1	7e-17	(Cucumis melo)
STRING	XP_004157253.1	7e-17	(Cucumis sativus)
STRING	POPTR_0008s20780.1	6e-17	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.4	1e-19	nuclear factor Y, subunit C9

Link Out ? help Back to Top
Phytozome	Zosma218g00060.1

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714] Bi C,Ma Y,Wang XF,Zhang DP Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis. Plant Mol. Biol., 2017. 95(4-5): p. 425-439 [PMID:28924726] Liu X, et al. Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering. Plant Physiol., 2018. 177(1): p. 105-114 [PMID:29599268]