PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma218g00100.1
Common NameZOSMA_218G00100
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NF-YB
Protein Properties Length: 214aa    MW: 24247.9 Da    PI: 4.7769
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma218g00100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB112.62.2e-3547140295
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                       + qd +lPian++rim++++P    is++ k+ vqecvs+fi f+ s+as kc+ e+r+ i+g+d+l ++ +lGfedyv+p+k ylk yr+ e
  Zosma218g00100.1  47 KPQDGYLPIANITRIMRRAIPDTVMISNNFKDFVQECVSDFIFFIISDASLKCKTERRRVITGEDVLSSIDSLGFEDYVKPFKSYLKFYRKEE 139
                       5699**************************************************************************************987 PP

             NF-YB  95 g 95 
                       +
  Zosma218g00100.1 140 A 140
                       6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.7E-3644146IPR009072Histone-fold
SuperFamilySSF471134.53E-2849153IPR009072Histone-fold
PfamPF008086.2E-1653115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.1E-108098No hitNo description
PRINTSPR006154.1E-1099117No hitNo description
PRINTSPR006154.1E-10118136No hitNo description
Gene3DG3DSA:1.10.20.106.7E-36186202IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAKNSPGYTC IEEATSLTND EDGENLNIDD DDNDDDDTTE NCRRGEKPQD GYLPIANITR  60
IMRRAIPDTV MISNNFKDFV QECVSDFIFF IISDASLKCK TERRRVITGE DVLSSIDSLG  120
FEDYVKPFKS YLKFYRKEEA NLGSSSLTTS NNQGLMESPN ANSYSNINDA DVYVDRNRIG  180
EKAALNSKEK VRVKKEKEKE KEKSSKFKEK GKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-2849136592NF-YB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805143.17e-33nuclear transcription factor Y subunit B-4-like
RefseqXP_025805144.17e-33nuclear transcription factor Y subunit B-4-like
TrEMBLA0A0K9PK001e-153A0A0K9PK00_ZOSMR; Nuclear transcription factor Y subunit beta
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.51e-32nuclear factor Y, subunit B1