PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma218g00110.1
Common NameZOSMA_218G00110
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NF-YB
Protein Properties Length: 186aa    MW: 20646.9 Da    PI: 4.681
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma218g00110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB142.21.2e-4433126295
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                       r+qd +lPian+srim+k++P+n kisk++k+ vqecvsefisf+tseas kc+ e r+ti+gdd+l ++ +lGfedyv++lk yl+ yr++e
  Zosma218g00110.1  33 RAQDGYLPIANISRIMRKAVPGNVKISKNSKDFVQECVSEFISFITSEASFKCKTEGRRTITGDDVLSSMESLGFEDYVKSLKSYLESYRKME 125
                       789****************************************************************************************99 PP

             NF-YB  95 g 95 
                       +
  Zosma218g00110.1 126 A 126
                       6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.8E-4428137IPR009072Histone-fold
SuperFamilySSF471139.94E-3435132IPR009072Histone-fold
PfamPF008085.9E-2239101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.9E-156684No hitNo description
PRINTSPR006151.9E-1585103No hitNo description
PRINTSPR006151.9E-15104122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSNWESGMSQ TGEQMTGKSE ILLPIREDEK GERAQDGYLP IANISRIMRK AVPGNVKISK  60
NSKDFVQECV SEFISFITSE ASFKCKTEGR RTITGDDVLS SMESLGFEDY VKSLKSYLES  120
YRKMEAMGSS SASTSLTTNN DNQVVMTSAY ANSYGTGNLN MNNNEEDPFL TRSDNLCNTI  180
RHEHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-3533122291Transcription factor HapC (Eurofung)
4g92_B1e-3533122291Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022138911.13e-43nuclear transcription factor Y subunit B-1-like isoform X3
SwissprotP252095e-41NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLA0A0K9PM431e-135A0A0K9PM43_ZOSMR; Nuclear transcription factor Y subunit B
STRINGPP1S462_7V6.11e-41(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-42nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]