PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma21g00380.1
Common NameZOSMA_21G00380
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 152aa    MW: 17310.9 Da    PI: 10.32
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma21g00380.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.78.5e-21551147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++eEd++lvd+v q+G ++W+t++  +g++R++k+c++rw++y
  Zosma21g00380.1  5 RGAWSAEEDKKLVDYVMQYGEKRWRTVPDLVGLNRCGKSCRLRWLNY 51
                     89********************************************9 PP
2Myb_DNA-binding52.31.3e-1658103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++eE+ l+++++++ G++ W++Ia +++ gRt++++k++w++yl
  Zosma21g00380.1  58 RGNISKEEEHLIIRLHNLIGNR-WALIAGRLP-GRTDNEIKNYWNTYL 103
                      7899******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.229156IPR017930Myb domain
SuperFamilySSF466892.93E-30399IPR009057Homeodomain-like
SMARTSM007173.4E-16454IPR001005SANT/Myb domain
PfamPF002491.8E-18551IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-23659IPR009057Homeodomain-like
CDDcd001675.88E-12752No hitNo description
SMARTSM007172.5E-1457105IPR001005SANT/Myb domain
PROSITE profilePS5129419.28757107IPR017930Myb domain
PfamPF002491.2E-1558103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2460106IPR009057Homeodomain-like
CDDcd001671.44E-1062103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MVKKRGAWSA EEDKKLVDYV MQYGEKRWRT VPDLVGLNRC GKSCRLRWLN YVKPGIKRGN  60
ISKEEEHLII RLHNLIGNRW ALIAGRLPGR TDNEIKNYWN TYLKYKSVSN NDLNSVICGG  120
SAVVSAPPLK VFETRDLFTS DIPQPSASRF S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-2851067107B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388433.15e-58PREDICTED: transcription factor MYB23-like
SwissprotQ9S9K91e-49MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A0K9PJQ61e-107A0A0K9PJQ6_ZOSMR; Myb domain protein 4
STRINGGSMUA_Achr2P17960_0012e-57(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-52myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]