PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma21g00640.1
Common NameZOSMA_21G00640
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 245aa    MW: 27684.3 Da    PI: 9.538
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma21g00640.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.31.3e-3157110255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWt++LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  Zosma21g00640.1  57 PRLRWTSDLHMSFVNAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 110
                      8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-2953111IPR009057Homeodomain-like
PROSITE profilePS5129410.63753113IPR017930Myb domain
SuperFamilySSF466895.73E-1456111IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-2357112IPR006447Myb domain, plants
PfamPF002493.1E-858109IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MRGSGEKQEE EKEEVTVLLR PNKKPCLLDL NSGEEEHGGG ITSKGSRVRQ YIRSKIPRLR  60
WTSDLHMSFV NAVERLGGQE RATPKLVLQM MNVRGLSIAH VKSHLQMYRS KKLDDSGQEK  120
PAEITVSDII HNSRSLFSDI LYCRTTATTA SCFPPSFRMA GNHGVLSSGS RSYDYSQLLQ  180
FPSSTHQTFD LQRPSVSTPY GIFNQRKDAL FGWPWQTHLI SSSLQGHPSR YQMPFSLEVS  240
EFQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-1758112357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1758112357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1758112357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1758112357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925633.12e-40uncharacterized protein LOC105048124 isoform X2
RefseqXP_028557319.12e-40uncharacterized protein LOC110104535 isoform X2
TrEMBLA0A0K9PLW10.0A0A0K9PLW1_ZOSMR; Uncharacterized protein
STRINGXP_008781403.14e-41(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-38G2-like family protein