PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma21g00970.1
Common NameZOSMA_21G00970
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 289aa    MW: 31348.8 Da    PI: 9.1096
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma21g00970.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.1e-13103147347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++++ + lG+g+W+ I++ +  +Rt+ q+ s+ qky
  Zosma21g00970.1 103 PWTEDEHRKFLKGLEVLGKGDWRGISKLFVSTRTPTQVASHAQKY 147
                      8*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.43596152IPR017930Myb domain
SuperFamilySSF466896.13E-1898152IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-1799151IPR006447Myb domain, plants
SMARTSM007171.8E-10100150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-10102146IPR009057Homeodomain-like
CDDcd001671.13E-9103148No hitNo description
PfamPF002491.3E-11103147IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEAEKHVAVG GGGGGGGRVM LFGVRIGGVE EEEDVEMWDD EVMKKSWSTG NLISCGDRSA  60
GFLPNTTNQV ELGYKSDGGL DQSRTKGRCA STGRASERKR GVPWTEDEHR KFLKGLEVLG  120
KGDWRGISKL FVSTRTPTQV ASHAQKYFLR QTNSNKKKRR SSLFDVVIND NVVATSNDFF  180
AFPQEIKTNL SLDDDTAKSG SSNNTIKSPA NLPTFREHPN QNSSTDTTAT PASGFNFLKL  240
SINSFPNHYT TTTSPGGDLE LRIAPPQPHR IRSDFSTSTN SAGSVIVV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020263307.17e-59transcription factor MYB1R1-like isoform X2
TrEMBLA0A0K9PJL30.0A0A0K9PJL3_ZOSMR; Uncharacterized protein
STRINGGSMUA_Achr7P06880_0019e-51(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.14e-36MYB_related family protein