PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma223g00020.1
Common NameZOSMA_223G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 414aa    MW: 48149.1 Da    PI: 9.5916
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma223g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.57.3e-111196190
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                      ffkvl     +k++ l+++ kf+ +  +k +e k  t    + ++W+v++  +  +  ++ ++GW+ Fv++++L+ g f+vF ++++ +f
  Zosma223g00020.1 11 FFKVL--LGDFKHK-LRMSEKFV-ALPEKYPELKLSTALGGKQKVWSVEIGKDPDGMFHLTGDGWRCFVEDHDLRLGYFLVFIYSSDVSF 96
                      66666..6666665.88888888.4433333434455555666*******555555559999*********************9987666 PP
2B3505.4e-16189283296
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       fk  +++++ k++ + +pk+f++++ ++ ++  +  l++ +g +W+v++ +  +   +r    ++++G  +F +an+Lk+gD+++F+l +++e
  Zosma223g00020.1 189 FKMIVHPSYIKKKKMHIPKEFCDTNHLVDTK--EANLTTING-TWTVRFYHrtS--NSRnvrSLFSSGSHDFLQANNLKQGDTCIFELLSNDE 276
                       57778899999999***********999555..677777655.89999944332..22245799***********************988766 PP

                       E..EEEE CS
                B3  90 felvvkv 96 
                       ++ ++ v
  Zosma223g00020.1 277 KRANFLV 283
                       6566655 PP
3B347.43.5e-153234041492
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                       + + +p +f +   +    + + tl+++ ++sWev +i   + ++g+  y ++kGWkeF+ +n+L+egD++ F+ +++   ++l
  Zosma223g00020.1 323 SAMHIPVSFSRGLYLRD--KSKATLTNSLNKSWEVAIITkrSIYKGTiyYSFSKGWKEFCYDNRLEEGDVCSFEPISEkGAAKL 404
                       55889999998874442..23799*************87553334447799***********************8876454444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.5E-115102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-136108IPR015300DNA-binding pseudobarrel domain
CDDcd100175.90E-1111102No hitNo description
SMARTSM010190.00211104IPR003340B3 DNA binding domain
PfamPF023623.4E-81196IPR003340B3 DNA binding domain
PROSITE profilePS508639.09350104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-16185280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-15185283IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.0E-10188280IPR003340B3 DNA binding domain
PROSITE profilePS508639.953188287IPR003340B3 DNA binding domain
CDDcd100173.10E-11189284No hitNo description
PfamPF023628.5E-14189282IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-17307410IPR015300DNA-binding pseudobarrel domain
CDDcd100174.18E-11308412No hitNo description
SuperFamilySSF1019361.33E-15308398IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.3E-8309412IPR003340B3 DNA binding domain
PROSITE profilePS5086312.294310412IPR003340B3 DNA binding domain
PfamPF023625.5E-13323404IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MVDVEKQNFV FFKVLLGDFK HKLRMSEKFV ALPEKYPELK LSTALGGKQK VWSVEIGKDP  60
DGMFHLTGDG WRCFVEDHDL RLGYFLVFIY SSDVSFYVIP FDLSEFRIAY KPIQVQDTTT  120
TPTTIDDSEP VVVVIDDDHD EDITLKDVED YHDKQKLPQN LHESRKKNTN FRGKLGMEKM  180
VNVSSRPQFK MIVHPSYIKK KKMHIPKEFC DTNHLVDTKE ANLTTINGTW TVRFYHRTSN  240
SRNVRSLFSS GSHDFLQANN LKQGDTCIFE LLSNDEKRAN FLVTKHIKCS RDEFRRNLNR  300
NKFIVRSHFQ AIITKNQLFG KFSAMHIPVS FSRGLYLRDK SKATLTNSLN KSWEVAIITK  360
RSIYKGTIYY SFSKGWKEFC YDNRLEEGDV CSFEPISEKG AAKLEMRVTF RKN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PL860.0A0A0K9PL86_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-13B3 family protein