PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma223g00250.1
Common NameZOSMA_223G00250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 229aa    MW: 25172.2 Da    PI: 9.5947
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma223g00250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-192675255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr ++ +gr++AeIrdp++   ++r++lg+f++ae+Aa+a++ a+++l+g
  Zosma223g00250.1 26 KYRGVRKRP-WGRYAAEIRDPTK---KTRVWLGTFDSAEDAARAYDSAARALRG 75
                      8********.**********864...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.5512683IPR001471AP2/ERF domain
PfamPF008475.0E-132675IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-222684IPR016177DNA-binding domain
CDDcd000183.35E-322683No hitNo description
Gene3DG3DSA:3.30.730.106.1E-322683IPR001471AP2/ERF domain
SMARTSM003803.0E-372689IPR001471AP2/ERF domain
PRINTSPR003677.5E-112738IPR001471AP2/ERF domain
PRINTSPR003677.5E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MRKGSRGVAA PVAVAALENG SIESVKYRGV RKRPWGRYAA EIRDPTKKTR VWLGTFDSAE  60
DAARAYDSAA RALRGFKAKT NFPLPSPLHN PPITLPLPNY QHRTCQFSST SPSFPKQSVK  120
TTLLRPATSS HSSTVESSCG PQPRQISGFP CAKERHHQPP RLLTEEDADG FHSDCGSSSS  180
VVDDDDGDVA SVYRKQQQPR KTLPFAFDLN FPPLPDDDLY YQSTALRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-22183172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020694474.17e-49ethylene-responsive transcription factor 3
TrEMBLA0A0K9PIX61e-167A0A0K9PIX6_ZOSMR; Putative Ethylene-responsive transcription factor
STRINGfgenesh2_kg.1__4150__AT1G50640.14e-44(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.19e-26ethylene responsive element binding factor 3