PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma223g00500.1
Common NameZOSMA_223G00500
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 323aa    MW: 35460.4 Da    PI: 6.9465
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma223g00500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1864112355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Zosma223g00500.1  64 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAALSMKG 112
                       66******.**********965...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.87763120IPR001471AP2/ERF domain
SMARTSM003802.5E-3263126IPR001471AP2/ERF domain
CDDcd000184.82E-2963122No hitNo description
Gene3DG3DSA:3.30.730.102.8E-2864120IPR001471AP2/ERF domain
PRINTSPR003674.4E-86475IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2064121IPR016177DNA-binding domain
PfamPF008471.0E-1166112IPR001471AP2/ERF domain
PRINTSPR003674.4E-886102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MLAHDLPRPL LLNISIFVDP SIIFQMSLLR PSSSSSSSSS SCHNINVPTE RGRGRRKGVE  60
PGRFLGVRRR PWGRYAAEIR DPSTKERHWL GTFDTAEEAA LAYDRAALSM KGCQARTNFN  120
YTAMVETSPF ILPIHTTQSL LPTLQTPSPT PQQQQSIFAI PFEDQQQQTH LFCTSDNCAA  180
CIKNVCKGAD ADQYNQYCSG DDGSGYLSSI IPDRYLNPTS TNHGSNLSSS SSSSSLATGL  240
LVQNMEISGH HQCGDVSWMD KTDADGMTWE LTNGVRHSFP NLSVENQIAT AVPAFAPSSF  300
SQIHHNHHHH HTSYLQSSLP NV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-2154119571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241855.13e-52PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A0K9PJ020.0A0A0K9PJ02_ZOSMR; Uncharacterized protein
STRINGXP_010241855.11e-51(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105252838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.19e-29ERF family protein