PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma224g00050.1
Common NameZOSMA_224G00050
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 394aa    MW: 44226.6 Da    PI: 6.8445
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma224g00050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS321.51.8e-98143882374
              GRAS   2 velLlecAeavssgdle..laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.........sseelaalkl 83 
                        +lLl+cAe +ss++++     +lL r+++l+sp+g+  +R+aayf  AL+ rl  s+s+++      +  ++n         + +  +a++ 
  Zosma224g00050.1  14 LSLLLQCAEYISSNSATisDCYNLLLRINHLSSPYGSCPERVAAYFSDALRYRLIASSSSVVVRNDHLKFLSSNakrmlkiekHRRIYQAFQH 106
                       589**********9887447789********************************98888775554444333332335553323333344455 PP

              GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg...ppslRiTgvgspesgskeeleetgerLakfAeelg 173
                       ++ +sP++kfsh+taNqaIleav+gee vHi+D+di+qGlQWp L+q LasRp++      ++iTgvg+    s e le+tg+rL++fA++l+
  Zosma224g00050.1 107 YNSMSPLVKFSHFTANQAILEAVDGEESVHIVDLDIMQGLQWPGLFQILASRPNNvkmIKCFKITGVGP----SIELLEATGRRLSDFAAALE 195
                       *****************************************************6622255789******....9******************* PP

              GRAS 174 vpfefnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyy 264
                       ++fef ++ + +++++ ++ ++ +  +E+++Vn++   hrl+d+ +s  +     +++vk+l+Pk++++v+q++++    sF +rfleal+yy
  Zosma224g00050.1 196 IKFEFCPV-EGKISEIdDIGAI-LTGNEVTVVNWMQ--HRLYDSIGSDFD----AIRIVKELQPKLITIVNQDINTsLWFSFSRRFLEALRYY 280
                       *******6.5555555145555.777*********9..9**977777777....9*********************5667************* PP

              GRAS 265 salfdsl..eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                       salfd+l   +++ r s er++vEr+++g ei+n+ a++ +      +++e W +++++ GF++v+l  + a+qa+lll +++++gy++ ee+
  Zosma224g00050.1 281 SALFDALsdTSTVERGSLERHTVERQVFGCEIRNIMAMQYDI----VTKVEGWGDKFSKHGFRQVSLAGNPATQASLLLGMHPWKGYTLVEEN 369
                       *******8445689999***********************98....99999****************************************** PP

              GRAS 356 gslvlgWkdrpLvsvSaWr 374
                       g+l lgWkd +L++++aW+
  Zosma224g00050.1 370 GCLKLGWKDTSLLTATAWQ 388
                       ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.1941368IPR005202Transcription factor GRAS
PfamPF035146.1E-9614388IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MTGGDNDTNN LQMLSLLLQC AEYISSNSAT ISDCYNLLLR INHLSSPYGS CPERVAAYFS  60
DALRYRLIAS SSSVVVRNDH LKFLSSNAKR MLKIEKHRRI YQAFQHYNSM SPLVKFSHFT  120
ANQAILEAVD GEESVHIVDL DIMQGLQWPG LFQILASRPN NVKMIKCFKI TGVGPSIELL  180
EATGRRLSDF AAALEIKFEF CPVEGKISEI DDIGAILTGN EVTVVNWMQH RLYDSIGSDF  240
DAIRIVKELQ PKLITIVNQD INTSLWFSFS RRFLEALRYY SALFDALSDT STVERGSLER  300
HTVERQVFGC EIRNIMAMQY DIVTKVEGWG DKFSKHGFRQ VSLAGNPATQ ASLLLGMHPW  360
KGYTLVEENG CLKLGWKDTS LLTATAWQPI SST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1171939125382Protein SCARECROW
5b3h_A1e-1171939124381Protein SCARECROW
5b3h_D1e-1171939124381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024183770.11e-142scarecrow-like protein 23
SwissprotQ9FHZ11e-131SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A0K9PIQ90.0A0A0K9PIQ9_ZOSMR; Scarecrow-like protein 23
STRINGXP_009375331.11e-141(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-133GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]