PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma224g00220.1
Common NameZOSMA_224G00220
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 305aa    MW: 33657.7 Da    PI: 6.9329
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma224g00220.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19143192255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ kl+g
  Zosma224g00220.1 143 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAAFAYDHAAFKLRG 192
                       59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.32E-33142202No hitNo description
SMARTSM003804.5E-37143206IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-23143201IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.8E-32143201IPR001471AP2/ERF domain
PROSITE profilePS5103222.84143200IPR001471AP2/ERF domain
PfamPF008475.7E-12144192IPR001471AP2/ERF domain
PRINTSPR003678.9E-11144155IPR001471AP2/ERF domain
PRINTSPR003678.9E-11166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MVGYLDMQQF FSESNVDEDL MKALQPFITS ASSSSFSSIL SSSSIPPNPS PAFPSFYATA  60
PQQHSQSYQV LTHSRPPPIP TPSLATHTPV ASSSSMGLTH LNPTQIHQIQ TQLQFHHQPT  120
SHLAPRHLPM KHTSPTVCKP AKLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFDTAEDAA  180
FAYDHAAFKL RGDFARLNFP NHRHTGAHAA GALPAAVDAK LESICKNLGI TGDKSNTKIQ  240
PKLEKAATER IEEDNSSSSD ESSTMADMKS LDFTDDSWDE PADSLLKFPS IEIDWDSILS  300
LNNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22141206369ATERF1
3gcc_A2e-22141206369ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SIE42e-63ERF56_ARATH; Ethylene-responsive transcription factor ERF056
TrEMBLA0A0K9PL650.0A0A0K9PL65_ZOSMR; Uncharacterized protein
STRINGscaffold_400172.13e-70(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-48ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]