PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma225g00040.1
Common NameZOSMA_225G00040
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 185aa    MW: 20856.2 Da    PI: 9.4412
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma225g00040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.5e-32102160159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK vk+++fprsYY+Cts+gC+vkk+v+r a+d+ +v++tYeg H+h+
  Zosma225g00040.1 102 LDDGYRWRKYGQKAVKNNNFPRSYYKCTSQGCSVKKQVQRHARDEGIVVTTYEGVHTHH 160
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-3387160IPR003657WRKY domain
SuperFamilySSF1182906.54E-2994161IPR003657WRKY domain
PROSITE profilePS5081129.86197162IPR003657WRKY domain
SMARTSM007741.7E-37102161IPR003657WRKY domain
PfamPF031061.4E-25103160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006817Biological Processphosphate ion transport
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MNNYPNPYQK ELHQYPMSTT GGGGGGGGGE GAAKLQWRSM EEESMNMSHN LNNTGASSSS  60
NNRLMFEEEE EKSLGINKKG SGGLKIKKHK FAFQTRSQVD ILDDGYRWRK YGQKAVKNNN  120
FPRSYYKCTS QGCSVKKQVQ RHARDEGIVV TTYEGVHTHH IEKPNDNFEN ILNQMQIYAK  180
FDPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2893161876Probable WRKY transcription factor 4
2lex_A1e-2893161876Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00325DAPTransfer from AT3G01970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010250654.14e-57PREDICTED: probable WRKY transcription factor 75
SwissprotQ9S7635e-49WRK45_ARATH; Probable WRKY transcription factor 45
TrEMBLA0A0K9PL061e-136A0A0K9PL06_ZOSMR; Uncharacterized protein
STRINGXP_010250654.12e-56(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01970.11e-51WRKY DNA-binding protein 45
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chen L,Xiang S,Chen Y,Li D,Yu D
    Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence.
    Mol Plant, 2017. 10(9): p. 1174-1189
    [PMID:28735023]