PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma228g00070.1
Common NameZOSMA_228G00070
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 599aa    MW: 64920.5 Da    PI: 7.2686
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma228g00070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-05334356123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ C+k Fs+   L  H+r H
  Zosma228g00070.1 334 YVCSVCTKAFSTGQALGGHMRWH 356
                       9********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003555.16183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SuperFamilySSF576672.1E-8264287No hitNo description
PfamPF139123.8E-9264288IPR007087Zinc finger, C2H2
SMARTSM003550.83265287IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.556265292IPR007087Zinc finger, C2H2
PROSITE patternPS000280267287IPR007087Zinc finger, C2H2
SuperFamilySSF576672.1E-8329356No hitNo description
Gene3DG3DSA:3.30.160.601.6E-5332357IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.699334361IPR007087Zinc finger, C2H2
SMARTSM003551.4334356IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-8334358IPR007087Zinc finger, C2H2
PROSITE patternPS000280336356IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MDRDDDRKRR RPEREHDPEA ERSHRRTKGS GSSSVPKVVG MEEEEEEEED EDEEKRKEKI  60
GSCILCGADF YSMQAWSQHM ETHSDNYRYC NPNLPTMNQI VHGKKKVGFY SNPTRNLNLR  120
PIDEAVQGEE DEVASSLVLL SGILPEHQIS TAAANEAVRK RKGDFGGASD AGLQLAAAFD  180
ISKNKGKEIV AATFDLSKKK SKEIVAAAFD ISKNKGKEIV AAFDNTKGKG KEIILVSSPS  240
SSEPASLSLP LTLALVGASG DGSVFECSSC KRVFDSHQAL GGHRASHKNI QGCYASEKKD  300
QPQDDSDLLR RSSTVERILQ AARLSSGLIQ RKMYVCSVCT KAFSTGQALG GHMRWHLERN  360
QYLGPGTTPV TVSIPSQWSS GSISTFGIGN PSGLQQSASA QSYPTLADLT RPRAWMSPRE  420
AKLLPITSSY GGTSALGFGS TFSSHVSPSP PLPTPWIHLP RAPPTAGAGG GGGVHQQPYP  480
HMYQQGILEW LRGGSTSRLE YILPRSEAFV STNLNLSLGN WRNGAGIRPL GITEYGDRMR  540
GRGMLANSAG NLTGRNSNHS SAAQHQPPQL RGVEVDADPA QREDETEEEI DLDLKLGI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1610RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PKV30.0A0A0K9PKV3_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.12e-22C2H2-like zinc finger protein