PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma228g00080.1
Common NameZOSMA_228G00080
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 125aa    MW: 13489.2 Da    PI: 7.1262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma228g00080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000375173123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+++F ++  L  Hi +H
  Zosma228g00080.1 51 FECSSCKRVFDSHQALGGHIASH 73
                      89******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.7E-85074IPR007087Zinc finger, C2H2
PROSITE profilePS501579.125173IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MNYEIVVAFD NTKGKGKEII LVSSLSSSKP ASPPLPLTLA LVGASGDGSV FECSSCKRVF  60
DSHQALGGHI ASHKNIHGCY TSEKNDQPQE DSDLLRRSSV VERILQTALG GHMQWHGIWR  120
ETNI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028768115.11e-13zinc finger protein ZAT3-like
RefseqXP_028778710.11e-13zinc finger protein ZAT3-like
TrEMBLA0A0K9PIU42e-87A0A0K9PIU4_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.12e-11C2H2-like zinc finger protein