PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma22g00710.1
Common NameZOSMA_22G00710
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 250aa    MW: 29462.3 Da    PI: 8.6946
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma22g00710.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.61.4e-074872123
                     EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                     y+Cp   CgksF+ +s Lk+H ++H
  Zosma22g00710.1 48 YTCPefGCGKSFKYPSKLKKHNSSH 72
                     9********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-64267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.43E-746100No hitNo description
SMARTSM003556.4E-44872IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.9674877IPR007087Zinc finger, C2H2
PROSITE patternPS0002805072IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-56899IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01578103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080103IPR007087Zinc finger, C2H2
SMARTSM0035527106127IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.85E-7117179No hitNo description
SMARTSM003550.038137162IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.739137167IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-5139162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280139162IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-6164179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.2168194IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170194IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MKRHVDDFHN EDDSQLHCHK ETKHVDFHNE EDFQLNRDKE VKEHKKNYTC PEFGCGKSFK  60
YPSKLKKHNS SHSKSTEVIC SEDGCMKSFS NKNCLKEHMY SCHRFIKCHV CETQQLKKNF  120
KRHQRIHEQS SSPTEMLRCF FEGCCHKFSN KSNLKKHVKA VHLQERPFVC HFSGCGKKFP  180
FKHVRDNHEK SGIHVYVPAD EEFRQHGRGG RKRICPDIES LFRKRVDAPS QTSALDDPQA  240
YLRWLLDED*
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931909.14e-80transcription factor IIIA
SwissprotQ84MZ44e-60TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0K9PIL10.0A0A0K9PIL1_ZOSMR; Uncharacterized protein
STRINGAquca_002_00921.14e-78(Aquilegia coerulea)
STRINGXP_008793643.13e-77(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.18e-56transcription factor IIIA