PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma22g00720.1
Common NameZOSMA_22G00720
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 220aa    MW: 24704.6 Da    PI: 6.7888
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma22g00720.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-06186208123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C  C+  F+ + +Lk+H+++H
  Zosma22g00720.1 186 YTCVECNAIFTKPAYLKQHMQRH 208
                      9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.47E-6138208No hitNo description
SMARTSM0035541140163IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4185209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.346186209IPR007087Zinc finger, C2H2
SMARTSM003550.0029186208IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEDSQEIAVT AIVVRDPAKD HKRKRSDFEK DAEISPAASS LESDTVFSME VELNASVLKG  60
GSQDPMMRQK IVAESSESAD SELLEEVQEN EVYFEGTTTI SADSKMINSK KNRSHVWEAE  120
KDSNGGDGKH KQSFRDIRRY YCEYCGVCRS KKTLITAHVL SNHKEKIQNK TNDVRDANHG  180
SGGRGYTCVE CNAIFTKPAY LKQHMQRHSI QIILNHYTV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PKM11e-163A0A0K9PKM1_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17974810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.22e-17transcription factor IIIA