PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma22g01000.1
Common NameZOSMA_22G01000
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 235aa    MW: 26598.1 Da    PI: 6.6063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma22g01000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61e-08109151754
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++ r RR+ri +++  Lr+l+P        +++ a++L +A++Y+k L
  Zosma22g01000.1 109 IAARHRRERISERIRILRRLVPGG-----SRMNTASMLDEAIQYVKFL 151
                      56799*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.754102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-13107164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-13107161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-12108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-6110151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.69E-5125156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGNYHYHYQN ILHEHMISDY SVEFLPPNTL AGIHAGDGGC CSIEELGEEM NEKRKKKKVE  60
EKEVEEEKLG EMKEMMYKIA VMQPVDIDPS TIKKPKRRNV RISNDPQSIA ARHRRERISE  120
RIRILRRLVP GGSRMNTASM LDEAIQYVKF LKRRVRELES SSSSSTATAT ATASSSYSPI  180
TGTQLQAHLE EGNGEDWLTR PPIDRGMFSS SLFVEAIDDG LGFCFTDDHH QIIL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022950638.15e-52transcription factor IND-like
TrEMBLA0A0K9PKN61e-174A0A0K9PKN6_ZOSMR; Uncharacterized protein
STRINGGLYMA08G16570.23e-51(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.14e-25bHLH family protein