PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma22g01060.1
Common NameZOSMA_22G01060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 336aa    MW: 38315.6 Da    PI: 9.0769
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma22g01060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.52.6e-1485177390
             FAR1   3 YneYAkevGFsvrkskskks..krnge..itkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      Y +YA+++ Fsvr  +++++  +++g+   ++r++  ske + +  +  ++ +rr++a +++gC  ++k+k+e  +++w v++++leHnH+l+
  Zosma22g01060.1  85 YYDYASKMDFSVRLGSTNYKtsRDDGKffLVMRRLLYSKERTVDLLHPPKSGKRRKNAISKCGCCTSIKIKREGmSEVWIVKHIVLEHNHPLT 177
                      999**********987665534555542235677777777777766666899**********************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-1185177IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MPNANYVHHH NHDIPLDNLR SLISSENNDL TGQLNVITFS VNASPSFFVP KQPTDTNSSS  60
DNVKLNSPPT VGQFYFSYSN ALDQYYDYAS KMDFSVRLGS TNYKTSRDDG KFFLVMRRLL  120
YSKERTVDLL HPPKSGKRRK NAISKCGCCT SIKIKREGMS EVWIVKHIVL EHNHPLTTLS  180
KVRFFLINRS ISSTPRLLFQ SLSEVNVPVS QQTAYFSSQV GGIEHMGCTQ LDISNMCRDD  240
RVDLKNYDVD LLVEEFELKK SVQLDFFYSI VKDSSGRLKH VFWADSIMIQ HFKLFGDAVT  300
FDTTYKTNVY PLIFGVFCGV NHHRKTVIFG SAFLR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138PKSGKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PKP30.0A0A0K9PKP3_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-32FAR1-related sequence 5