PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma22g01290.1
Common NameZOSMA_22G01290
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 215aa    MW: 23969.1 Da    PI: 9.8677
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma22g01290.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-1957105355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ +++++g
  Zosma22g01290.1  57 YRGIRQRP-WGKWAAEIRDPTK---GVRVWLGTFNTAEEAARAYDREARRIRG 105
                      9*******.**********964...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-2356114IPR016177DNA-binding domain
PROSITE profilePS5103223.76256113IPR001471AP2/ERF domain
SMARTSM003804.5E-3756119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3256113IPR001471AP2/ERF domain
CDDcd000186.04E-3257114No hitNo description
PRINTSPR003674.5E-125768IPR001471AP2/ERF domain
PfamPF008475.5E-1257105IPR001471AP2/ERF domain
PRINTSPR003674.5E-127995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MCGGAILADI FPSRTDAFRS NLQRNGLFSS GSYEAKAKPQ PQPQPEKGKK RVRKNMYRGI  60
RQRPWGKWAA EIRDPTKGVR VWLGTFNTAE EAARAYDREA RRIRGKKAKV NFPIEERQTT  120
ALLKPSQHQQ TYLAPLSANR VLTEEVIRKI PEELLAMESY MKFLDEEPYM GSAGSSASNT  180
VSAGESAQDL PPAATSSLEL WSFDDSDPLT LNAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2357114664ATERF1
3gcc_A4e-2357114664ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387936.11e-53PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLA0A0K9PIP31e-157A0A0K9PIP3_ZOSMR; Ethylene responsive transcription factor 2b
STRINGGSMUA_AchrUn_randomP27100_0015e-53(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.16e-36ERF family protein