PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma234g00240.1

Common Name

ZOSMA_234G00240

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 195aa MW: 22406.7 Da PI: 10.4454

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma234g00240.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.5	1.4e-15	2	89	5	90
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCk...aklkvkkek.dgkwevtkleleHnHela 90 YA ++GF+vr++++k + ++e++ r++ Csk+g++ ++ +++ +++++ r +C a++ +++++ ++ w+v ++ ++HnH+l+ Zosma234g00240.1 2 GYAGNIGFNVRMRSTKIN--DQEMVGRRMFCSKQGYALTTATDNIVNEKKQRRIRNSCSgylAMIYISLDRsSKLWRVVNFIQDHNHPLM 89 5**********98887..9999*********999999666666666777777544599*99999************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-13	2	89	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MGYAGNIGFN VRMRSTKIND QEMVGRRMFC SKQGYALTTA TDNIVNEKKQ RRIRNSCSGY 60 LAMIYISLDR SSKLWRVVNF IQDHNHPLMT PSKKRYLPVN RVITPLSRAL FQSLNTSNIS 120 PSDQYCVAAQ EVGGFDHIQF TPSDLSNMRR DDRCNIIQRN ADLLIELFEE RKNKSSNFFS 180 RSLGMRMVIF MSNT*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PI73	1e-143	A0A0K9PI73_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-14	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma234g00240.1