PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma234g00280.1
Common NameZOSMA_234G00280
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WOX
Protein Properties Length: 63aa    MW: 7028.22 Da    PI: 4.9024
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma234g00280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.44.4e-071962644
                      S--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHH CS
          Homeobox  6 tftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqV 44
                      ++t+ ql++Le +F++ n +p++ +++e++ +     +++e++V
  Zosma234g00280.1 19 NPTTMQLQILEGMFKEcNGTPNKVKIKEITFEFlqygEISETNV 62
                      79*************99************988777777777776 PP
2Wus_type_Homeobox47.25.5e-161962750
  Wus_type_Homeobox  7 tPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNV 50
                       +Pt+ Q++iLe ++k+   tPnk +i++it e  +yG+i+++NV
   Zosma234g00280.1 19 NPTTMQLQILEGMFKECNGTPNKVKIKEITFEFLQYGEISETNV 62
                       8******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000469.5E-51962IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MEMVAPAGPM YVKWKSVGNP TTMQLQILEG MFKECNGTPN KVKIKEITFE FLQYGEISET  60
NV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PHY99e-38A0A0K9PHY9_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20700.13e-12WUSCHEL related homeobox 14