PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma236g00020.1
Common NameZOSMA_236G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 248aa    MW: 28377.1 Da    PI: 9.6149
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma236g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.95.3e-1650142190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                       +fY  YA  v F+vr+ +sk    +  i +++fvCsk+g++ ++ ++     +k +r++ + r +Cka+++ k ++ + +w+v+ ++++H+He
  Zosma236g00020.1  50 QFYYCYAGYVAFDVRRYSSKLI--DYVIQSKKFVCSKQGESMKKMDTdlveCHKISRKSHNVRESCKAQITFKIDTgSTNWRVHIFVKHHTHE 140
                       6****************98887..999*************999988889887888999999***************9**************** PP

              FAR1  89 la 90 
                       l+
  Zosma236g00020.1 141 LV 142
                       97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1250142IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDDDVQTSIS IDSPSRNTNA LSIVNSNDTS PPPPIPYVGQ IFPDLESGRQ FYYCYAGYVA  60
FDVRRYSSKL IDYVIQSKKF VCSKQGESMK KMDTDLVECH KISRKSHNVR ESCKAQITFK  120
IDTGSTNWRV HIFVKHHTHE LVTSKKRRFL RVNRHMSSTS RGLLDSLNSA HIQPSQQYSY  180
TAMASGGFFN LSYTQNDFYN YRRDGRISAC PKDVDLVLDK FENLKSLNPS FFYSIAKDDK  240
GKLKNLF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PK120.0A0A0K9PK12_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-27FAR1-related sequence 5