PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma237g00010.1
Common NameZOSMA_237G00010
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 439aa    MW: 48716.5 Da    PI: 7.8241
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma237g00010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.62.3e-14237329390
              FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       Y ++A+++ Fsv+  ++++     + ++  +++++ Csk+g+++     t+ +rr++ ++r+gC  ++k k  + ++kw++++++l+HnH+++
  Zosma237g00010.1 237 YYDFASSTRFSVCLGSTQNIldkeTGQKILVMKRLLCSKQGSPNLILPPTNGTRRKNGVSRCGCLVSIKFKGIDrSDKWVIDSVNLDHNHSFT 329
                       999**********9998776664345556789************9999999*********************999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-10237329IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MASPTSFGNQ HRLTSLQVSP NTNSIFVTPP PYRTQQFTYD HTNKSCNVSL KFHFNSPQCQ  60
TNANTKPSNV AFSTPLDPDA PASNIVHSDF VQCTPAEIKK SSANMSYGTA KIPNSMNCQF  120
NSPHCLTTVN PIDSSVNISR SLDSDNVRCN FFDSENVQSA SDDIGESSVQ IPANSVNVSC  180
GTAKTPDNHL KRKFSSTGGY PTSPNHENGS SDYSQYSKPC SIVGEVFPSY EMAFQSYYDF  240
ASSTRFSVCL GSTQNILDKE TGQKILVMKR LLCSKQGSPN LILPPTNGTR RKNGVSRCGC  300
LVSIKFKGID RSDKWVIDSV NLDHNHSFTT PSKIRYLPIN RSISHTSKIL FSSLADVNVP  360
VSQQAAYFFN QLGGPENMGC MTLDINNMVR DDRIDLKNYD VDLIVEDFEM KKLENAQFFY  420
DLVKDNEGRL KHLFRRDL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2562140.0AC256214.1 Zostera marina clone XTP02-B06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PJX70.0A0A0K9PJX7_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-13FAR1-related sequence 5