PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma239g00280.1
Common NameZOSMA_239G00280
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 375aa    MW: 40738.3 Da    PI: 6.19
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma239g00280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-1655100147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +g+W++eEd +l ++v ++G ++W++Iar +  gR++k+c++rw + 
  Zosma239g00280.1  55 KGPWSPEEDAILSRLVGKFGARNWSLIARGIS-GRSGKSCRLRWCNQ 100
                       79******************************.***********985 PP
2Myb_DNA-binding55.21.6e-17107151147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       r++++ eEd++++ a++ +G++ W++Iar +  gRt++ +k++w++ 
  Zosma239g00280.1 107 RKPFSDEEDQIIIAAHAIHGNK-WASIARLLE-GRTDNAIKNHWNST 151
                       789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.0550101IPR017930Myb domain
SuperFamilySSF466891.01E-2952148IPR009057Homeodomain-like
SMARTSM007172.4E-1454103IPR001005SANT/Myb domain
PfamPF002491.2E-1555100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2556108IPR009057Homeodomain-like
CDDcd001678.47E-145799No hitNo description
PROSITE profilePS5129426.28102156IPR017930Myb domain
SMARTSM007171.5E-16106154IPR001005SANT/Myb domain
PfamPF002498.3E-15107151IPR001005SANT/Myb domain
CDDcd001672.18E-12109152No hitNo description
Gene3DG3DSA:1.10.10.605.4E-23109155IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MENEQFSVPA ADAAVESGGG GYSGGVHEVE PEEDGTGEEV MGGAGRGGGG MDRVKGPWSP  60
EEDAILSRLV GKFGARNWSL IARGISGRSG KSCRLRWCNQ LDPCVKRKPF SDEEDQIIIA  120
AHAIHGNKWA SIARLLEGRT DNAIKNHWNS TLKRQCFEFD RPTIHVMKGD VPPESGSADR  180
KGSSEETLSC ADANSARFPD RRDGSSPETM SNHQFEDRTH MRENKDPPNL FRPIARLSAF  240
RPVSFSNANV SVVPNSAPLC CPSIQFMMKH DNSEQIHGEP PQVPARCGYG CCRSSTHQNP  300
SSLLGPEFVE FEDLPSISSH DIASIATELS SVAWLKSGLD SSSTKLLDWS VPNGMTSQGQ  360
HTAPHFPQLN NRMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-39521554107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262707.11e-118PREDICTED: uncharacterized protein LOC104601164
TrEMBLA0A0K9PHR50.0A0A0K9PHR5_ZOSMR; Uncharacterized protein
STRINGXP_010262707.11e-118(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.14e-80myb domain protein 1