PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma23g01470.1
Common NameZOSMA_23G01470
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 330aa    MW: 37123.6 Da    PI: 6.4179
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma23g01470.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.3e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lvd+++++G g+W++ ++  g++R++k+c++rw +yl
  Zosma23g01470.1 15 KGPWTNEEDQKLVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding54.82.2e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE++ +++++  lG++ W+tIa +++ gRt++++k++w+++l
  Zosma23g01470.1  68 RGKFSSEEEQSILNLHSILGNK-WSTIATHLP-GRTDNEIKNFWNTHL 113
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-24965IPR009057Homeodomain-like
PROSITE profilePS5129417.3691062IPR017930Myb domain
SuperFamilySSF466891.21E-3112109IPR009057Homeodomain-like
SMARTSM007171.4E-151464IPR001005SANT/Myb domain
PfamPF002491.3E-171562IPR001005SANT/Myb domain
CDDcd001674.23E-121762No hitNo description
PROSITE profilePS5129426.01463117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2766118IPR009057Homeodomain-like
SMARTSM007172.8E-1567115IPR001005SANT/Myb domain
PfamPF002492.5E-1568113IPR001005SANT/Myb domain
CDDcd001675.69E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGRSPCKELQ TGLKKGPWTN EEDQKLVDYI QKHGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSSEEEQSIL NLHSILGNKW STIATHLPGR TDNEIKNFWN THLKKKLIQM  120
GIDPMTHRPR TDVLASLPHL IALTNLAELI NYRQNQWDDD SLRMQFRQSE AVQMAKFQNL  180
LLQSTATAAA AVTTQTGYQT EQPADATTVN ISQDNNVSMN TTTESRYLPH LEIPLVDSSK  240
QPFVGNNTIH ELNEYCSGLS TQLISPNSTQ VSVGNNIMKG DPCFANSADY AGSCAIDGKD  300
TTTLSSFWQE IDGDDQFCLD NNFIYEYEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939659.11e-105transcription factor MYB93
SwissprotQ9S9Z22e-93MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0K9PHD00.0A0A0K9PHD0_ZOSMR; Uncharacterized protein
STRINGVIT_07s0141g00100.t011e-102(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.17e-94myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]