PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma244g00060.1
Common NameZOSMA_244G00060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 182aa    MW: 20305.9 Da    PI: 9.6151
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma244g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.2e-056587123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C + F ++  L  H++ H
  Zosma244g00060.1 65 FTCNYCQRKFYSSQALGGHQNAH 87
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.12E-66292No hitNo description
PROSITE profilePS5015710.9076592IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MTIETIIKQH RRSYFNSPAI ASSLIIVAAM GHHHQMELQR EPLSLELTLS GSHLSSLQQI  60
PHRFFTCNYC QRKFYSSQAL GGHQNAHKFE RRLVKRRRQM GGINFNPHAI VASCLPLEFI  120
MNGSFVAQGS PDNSNSSSQH HVTRFAQIAS GGGDTYVPIN EKQENRSSSS SDDNLDLSLR  180
L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196RLVKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PGS01e-131A0A0K9PGS0_ZOSMR; Zinc finger protein 2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.14e-17zinc finger protein 4