PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma248g00110.1
Common NameZOSMA_248G00110
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 304aa    MW: 34523.8 Da    PI: 6.4039
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma248g00110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.91.5e-1792145356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Zosma248g00110.1  92 KKRRLNMEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 145
                       456899***********************************************9 PP
2HD-ZIP_I/II129.41.4e-4191183193
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       ekkrrl+ eqv++LE++Fe  +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lk+++da+k+en+ L++++++Lr+e+++
  Zosma248g00110.1  91 EKKRRLNMEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKKKFDAVKSENDLLQTQNKKLRAEIMA 183
                       69**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.31E-1973149IPR009057Homeodomain-like
PROSITE profilePS5007117.00687147IPR001356Homeobox domain
SMARTSM003891.6E-1790151IPR001356Homeobox domain
PfamPF000465.4E-1592145IPR001356Homeobox domain
CDDcd000861.68E-1592148No hitNo description
Gene3DG3DSA:1.10.10.601.5E-1894155IPR009057Homeodomain-like
PRINTSPR000311.7E-5118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000311.7E-5127143IPR000047Helix-turn-helix motif
PfamPF021832.4E-14147187IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGCNGMASSF FPPTASFLLQ MQTPHDKSHE REAPRQNLPS SLAPIFSQDY GHGLLGKRSM  60
SLHSTMDQQQ VCHDEVNGED ELSDDCSQLG EKKRRLNMEQ VRTLEKNFEL GNKLEPERKL  120
QLARALGLQP RQIAIWFQNR RARWKTKQLE KDYDVLKKKF DAVKSENDLL QTQNKKLRAE  180
IMALNGREIS SEPINLNKET EVSCSYRSDN SSDINLEISR TPGKNESPMN NIAQQSMSFF  240
PITPVVPQPP SQVMVSSQLL QRQELQGPKV EHGGEDSFCN IFCSLDDQPA GFWAGWQEQQ  300
SFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020275215.11e-112homeobox-leucine zipper protein HOX21-like
SwissprotQ8LC034e-86ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A0K9PIX80.0A0A0K9PIX8_ZOSMR; Homeobox-leucine zipper protein ATHB-13
STRINGXP_008797128.11e-106(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-85HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]