PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma249g00200.1
Common NameZOSMA_249G00200
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 456aa    MW: 50257.7 Da    PI: 8.0071
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma249g00200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.27.6e-106388227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      +++ C +++rtG C++G +C+++H+p
  Zosma249g00200.1 63 GQPDCAYYMRTGLCRFGMTCRYNHPP 88
                      5799********************96 PP
2zf-CCCH38.12.6e-12109133327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C ++++tGtCk+G++CkF+H++
  Zosma249g00200.1 109 QPECEYYLKTGTCKFGATCKFHHPR 133
                       799********************96 PP
3zf-CCCH37.24.9e-12157180427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       ++C +++rtG+Ck+G++CkF+H++
  Zosma249g00200.1 157 VECAYYLRTGQCKFGSTCKFHHPE 180
                       79********************96 PP
4zf-CCCH37.15.3e-12318342327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C+f+++tG Ck+G+ C+F+H++
  Zosma249g00200.1 318 EPECQFYMKTGDCKFGPVCRFHHPR 342
                       799********************96 PP
5zf-CCCH344.8e-11362387126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ++++ C f++r+G+Ck+G +CkF H+
  Zosma249g00200.1 362 PGEPVCVFYSRYGICKFGINCKFDHP 387
                       57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6666189IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-46188IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-76488IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-56589IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-6106133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953106134IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-10109133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6110135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-5112134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6151181IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-5153180IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112153181IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-10157180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4159179IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-6315342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69315343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5318343IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8318342IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4321343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6359387IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6361388IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371361389IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-8363387IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MGYDTSVQNI YGGNGASASS ALTEGGGFYY SLNRDIDEEM MWQMNLRMNE EVMEGGPYPE  60
RLGQPDCAYY MRTGLCRFGM TCRYNHPPNR KLAVVAATMR GGYPERIGQP ECEYYLKTGT  120
CKFGATCKFH HPREKAGIAG RGAQLNELGY PMRMNEVECA YYLRTGQCKF GSTCKFHHPE  180
PSNMVRPLHS SIYPTVHSPS TAQQSYPGAL TNWPVARASF IPSPRWQGIS NYAQMILPQE  240
LVQVPGWNPY TGQLGSASPS PSQQQARGNA QYYSSPRQGE MSTAGAPPGS FSSYHIGSVP  300
SGVYGLQRDN VFPERPNEPE CQFYMKTGDC KFGPVCRFHH PRERTISIPD CMLSSLGLPL  360
RPGEPVCVFY SRYGICKFGI NCKFDHPTTV FPYGGAPSYS TDVPIQNFVG SSSLEPVTLT  420
LPLPQGPVDA VETNNKPRRL SSQLTAGDEK PEPKG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008812314.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0K9PGR20.0A0A0K9PGR2_ZOSMR; Zinc finger CCCH domain-containing protein 63
STRINGXP_008812314.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-155zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]