PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma24g00550.1
Common NameZOSMA_24G00550
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 258aa    MW: 29010.9 Da    PI: 7.3347
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma24g00550.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B390.41.4e-2880177185
                      EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                      f k+ltpsdv+k++rlv+pkk+a ++             +g+  e+++l ++d++gr+We++++y+k+s ++v+tkGW++Fvkan+L + D+v+
  Zosma24g00550.1  80 FRKELTPSDVGKLNRLVIPKKYAVQYlppilrpekttggEGDGSEGMMLEFKDRHGRVWEFRYCYWKSSHSFVFTKGWNKFVKANELTTDDTVL 173
                      89*****************************999999885555699************************************************ PP

                      EEE- CS
               B3  82 Fkld 85 
                      F++ 
  Zosma24g00550.1 174 FYRC 177
                      *954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-3377179IPR015300DNA-binding pseudobarrel domain
CDDcd100178.66E-2779176No hitNo description
SuperFamilySSF1019365.23E-2979179IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.7E-2180185IPR003340B3 DNA binding domain
PROSITE profilePS5086313.47980196IPR003340B3 DNA binding domain
PfamPF023621.1E-2580178IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTAFRNTTEM TEEGSNSNRR TPTVVPVCQV GSSMYRYGSC DGTKFKDYIL PTRYCMIFGN  60
GTYGNAGDGH EGVIFPRELF RKELTPSDVG KLNRLVIPKK YAVQYLPPIL RPEKTTGGEG  120
DGSEGMMLEF KDRHGRVWEF RYCYWKSSHS FVFTKGWNKF VKANELTTDD TVLFYRCEEY  180
CAAGEDRLKA NIAIKDYYFM IDVKRTCQED GDGVFREVPE TAVEIGPVAE GGGGRDGNKD  240
VKNGFKLFGV HIAPINI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-257917713103DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PGC70.0A0A0K9PGC7_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1971158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.13e-38RAV family protein