PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma24g00620.1

Common Name

ZOSMA_24G00620

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YB

Protein Properties

Length: 172aa MW: 18438.5 Da PI: 8.0639

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma24g00620.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	147.8	2.2e-46	20	112	5	97
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 d++l ian+ rimkk++P+naki k+aket+qec+sefisfvtsea+dkc++e+rkt+ng+d++wa++tlGf+ +v+p+k yl+kyr+ e+++ Zosma24g00620.1 20 DQLLSIANMRRIMKKIFPSNAKILKEAKETMQECASEFISFVTSEAADKCNKERRKTVNGNDICWAFGTLGFDSFVQPMKRYLNKYRDYESKR 112 899*************************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.9E-43	18	124	IPR009072	Histone-fold
SuperFamily	SSF47113	4.84E-33	20	118	IPR009072	Histone-fold
Pfam	PF00808	4.1E-24	23	85	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.7E-17	50	68	No hit	No description
PRINTS	PR00615	5.7E-17	69	87	No hit	No description
PRINTS	PR00615	5.7E-17	88	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MADGGSSSTT AETSGGGGGD QLLSIANMRR IMKKIFPSNA KILKEAKETM QECASEFISF 60 VTSEAADKCN KERRKTVNGN DICWAFGTLG FDSFVQPMKR YLNKYRDYES KRAATAAATA 120 AAEATLFRHA GSGDGDNHNQ DGNSDRHFKM DLAGPSSETT TTTLSFNVLG K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	1e-34	20	107	6	93	NF-YB
4g91_B	1e-34	20	107	5	92	Transcription factor HapC (Eurofung)
4g92_B	1e-34	20	107	5	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027071612.1	1e-49	nuclear transcription factor Y subunit B-5-like
Refseq	XP_027174014.1	1e-49	nuclear transcription factor Y subunit B-5-like
Swissprot	Q75IZ7	2e-42	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0K9PGF0	1e-124	A0A0K9PGF0_ZOSMR; Nuclear transcription factor Y subunit B-5
STRING	GSMUA_Achr11P05710_001	2e-48	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2917	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	2e-43	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Zosma24g00620.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]