PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma24g00950.1
Common NameZOSMA_24G00950
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WOX
Protein Properties Length: 377aa    MW: 42933.8 Da    PI: 4.3495
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma24g00950.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.9e-07170212440
         zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 
                      ++C+++e ++++  C+++ + lC  C  e H         H ++
  Zosma24g00950.1 170 WMCELCECEPATVVCQNDAVVLCTACDAEVH-FaniialrHHRI 212
                      79*****************************.435777775555 PP
2Homeobox43.26.6e-14306369157
                      TT--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC.....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   1 rrkRttftkeqleeLeelFek..nrypsaeereeLAkkl.....gLterqVkvWFqNrRakekk 57 
                      +r R+++tk q + Le  +++    +p++++++e+++ l     + +e++V++WFqN+Rak ++
  Zosma24g00950.1 306 KRCRWSPTKLQRQYLEMKYYMdmITTPDKKTIKEITECLlrfgeEAKEANVYNWFQNQRAKNRR 369
                      799***************9975689*************************************97 PP
3Wus_type_Homeobox55.81.1e-18307369363
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGk.iedkNVfyWFQNrkaRerq 63 
                        r RW+Pt+ Q + Le+ y+   + tP k+ i++it+ L ++G+  +++NV++WFQN++a++r+
    Zosma24g00950.1 307 RCRWSPTKLQRQYLEMKYYmDMITTPDKKTIKEITECLLRFGEeAKEANVYNWFQNQRAKNRR 369
                        78*************9988466789*****************64799**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.224167214IPR000315B-box-type zinc finger
SMARTSM003361.1E-5167214IPR000315B-box-type zinc finger
CDDcd000211.89E-5170214No hitNo description
PfamPF006433.7E-6170214IPR000315B-box-type zinc finger
SuperFamilySSF466893.94E-10302370IPR009057Homeodomain-like
PROSITE profilePS5007111.062303370IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-8303371IPR009057Homeodomain-like
SMARTSM003895.7E-6305374IPR001356Homeobox domain
PfamPF000462.2E-11306369IPR001356Homeobox domain
CDDcd000862.79E-8306371No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MALSPTSADD DICKQLDLEN YTMCIVDNEQ LQEPQQQQRQ EKIVDHDKPS SMALSPISTD  60
DDIFKYLDFE DYTMCTVDNE KLQAEPQQQQ RQEKTVDHDK PSSMVLSPIS TDDDIFKYLD  120
FEDYTMCTVD NEKLQAEPQQ QQQRQEEVVD HDKPSPFSSS SSSSSTTTRW MCELCECEPA  180
TVVCQNDAVV LCTACDAEVH FANIIALRHH RIPIPGDPIT YELLLSSQGV SIPSVSYQDP  240
TSSGNLFSNN PMATNDDRLC FTGGTSTDTI DELALLSSSI THDYNSSSYI KIDCMNATLE  300
GSREVKRCRW SPTKLQRQYL EMKYYMDMIT TPDKKTIKEI TECLLRFGEE AKEANVYNWF  360
QNQRAKNRRA KTNSLR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PIL40.0A0A0K9PIL4_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20700.15e-14WUSCHEL related homeobox 14