PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma24g01490.1
Common NameZOSMA_24G01490
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 428aa    MW: 47046.9 Da    PI: 8.2224
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma24g01490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.4e-18329363135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Zosma24g01490.1 329 CSHCGVQKTPQWRAGPMGSKTLCNACGVRYKSGRL 363
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.7E-6744414IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.426323359IPR000679Zinc finger, GATA-type
SMARTSM004012.7E-16323373IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.9E-15325386No hitNo description
Gene3DG3DSA:3.30.50.105.6E-15326361IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.74E-15328375No hitNo description
PROSITE patternPS003440329354IPR000679Zinc finger, GATA-type
PfamPF003201.9E-16329363IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MDGLEIVSAL SGNGHFQNMR SSPVKENANG YDQDEGERQR EDLWGLEWSM SHMVGDDIFV  60
EDLLNLGGIP EEVFDQQQQQ QQQPLLADKL GEGGKKEDQQ KMDEDEDRRS TNSSSALSYD  120
HVNPSEPIIP VGGIYDLEWV SQIVDDSFMD IPCSGISPAY LPLSNTATTN NHSRSPSDGS  180
TTSVSTSLKR TVICFSEKPL VVPSKPRSKR SRTGRSVWSF RHPFLIEPIC ASSVSSSSSS  240
TSSAFVLESK PINPEDFVAF SPVVLSRGRG RPPLHKKKNP LGVDQQLKKK KGRKSKVTTT  300
TTTTTTIPTV AAELFMLETG DVGANGRRCS HCGVQKTPQW RAGPMGSKTL CNACGVRYKS  360
GRLLPEYRPA ISPTFLDHVH SNSHRKVLEM RRKKEVQVQF KQQPLESASP PCHLPAAQAT  420
SQPPIVF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275290KKKNPLGVDQQLKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PIT50.0A0A0K9PIT5_ZOSMR; GATA transcription factor 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-38GATA transcription factor 5