PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma24g01560.1
Common NameZOSMA_24G01560
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family DBB
Protein Properties Length: 200aa    MW: 21723.5 Da    PI: 7.3382
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma24g01560.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.71e-07334435
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                     ++C+ +++ +++lfC  ++  lC +C ++ Hk
  Zosma24g01560.1  3 TICDVCDHAPAILFCAADEAALCLSCDEKVHK 34
                     68***************************995 PP
2zf-B_box217e-075292238
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                     e ++C+ +e+ ++ ++C  +++ lC +C +  H g    H+
  Zosma24g01560.1 52 EIHCCDICENAPAFFYCDIDGSSLCLQCDMMVHVGgkrtHE 92
                     6689**************************99966566675 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.1E-8147IPR000315B-box-type zinc finger
PROSITE profilePS501199.997147IPR000315B-box-type zinc finger
PfamPF006431.3E-6344IPR000315B-box-type zinc finger
CDDcd000212.06E-5334No hitNo description
PROSITE profilePS501198.8735196IPR000315B-box-type zinc finger
SMARTSM003361.7E-65196IPR000315B-box-type zinc finger
CDDcd000217.77E-55693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRTICDVCDH APAILFCAAD EAALCLSCDE KVHKCNKLAS RHIRVRLADP SEIHCCDICE  60
NAPAFFYCDI DGSSLCLQCD MMVHVGGKRT HERYLMLRQR VEFPGDKPAA SATDIIEVDD  120
ANTNTNTNTN TNTNTNTNTN GNANASTSVL PKMIDLNSRP RCSNGQISNA HLTLKRNKKN  180
AAAANAGIPV AAFQRNKEN*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909431.13e-74B-box zinc finger protein 19 isoform X3
RefseqXP_022763166.13e-74B-box zinc finger protein 19-like isoform X1
RefseqXP_022763168.13e-74B-box zinc finger protein 19-like isoform X1
RefseqXP_022763169.13e-74B-box zinc finger protein 19-like isoform X1
RefseqXP_022763170.13e-74B-box zinc finger protein 19-like isoform X1
SwissprotC0SVM51e-69BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0K9PGP51e-144A0A0K9PGP5_ZOSMR; Zinc finger protein CONSTANS-like protein
STRINGXP_010028649.13e-72(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-63DBB family protein