PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma256g00030.1
Common NameZOSMA_256G00030
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 204aa    MW: 22212.3 Da    PI: 8.1864
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma256g00030.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.8e-151462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l  +++q+G+g +W + ++++g +R++k+c++rw++yl
  Zosma256g00030.1 14 KGPWSPEEDAKLRFYIQQHGTGgNWIALPKKIGMKRCGKSCRLRWLNYL 62
                      79*******************************77************97 PP
2Myb_DNA-binding37.17.4e-1270111346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        ++ eEd+++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Zosma256g00030.1  70 GFSDEEDDIICSLYLSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       699*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.857962IPR017930Myb domain
SuperFamilySSF466898.58E-2711109IPR009057Homeodomain-like
SMARTSM007172.7E-111364IPR001005SANT/Myb domain
PfamPF002493.5E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-251569IPR009057Homeodomain-like
CDDcd001678.22E-91662No hitNo description
PROSITE profilePS5129420.56763117IPR017930Myb domain
SMARTSM007173.9E-1067115IPR001005SANT/Myb domain
PfamPF002492.3E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2370117IPR009057Homeodomain-like
CDDcd001675.07E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDAKLRFYIQ QHGTGGNWIA LPKKIGMKRC GKSCRLRWLN  60
YLRPDIKHGG FSDEEDDIIC SLYLSIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKVSVA  120
AAVPKKKSVG GVDVDGGGRS SGLLASTAQA DDLISSSSSS TVNWSYASLL GGSEFELDEL  180
LYGDDEIMKS MDGLDDVYAR LLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019457553.11e-78PREDICTED: transcription factor RAX3-like
SwissprotQ9M2Y99e-76RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A0K9PHX71e-145A0A0K9PHX7_ZOSMR; Myb domain protein 15
STRINGXP_006426152.12e-76(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-75myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]