PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma25g00280.1
Common NameZOSMA_25G00280
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 474aa    MW: 53876.9 Da    PI: 8.0616
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma25g00280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.2e-1365154198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +++s+v+   +l lp +f+ ++  +  e++  +l de+ ++ +  +    ++++  l++GW++F  ++gL +gD vvF+l+++++f  +v
  Zosma25g00280.1  65 FIKSMSQSHVTGGFWLGLPSHFCVKYLPD--EDTRFSLIDENFKESTSLF--LPNRSG--LSAGWRGFSIEHGLVDGDAVVFHLIKQTTF--KV 150
                      89************************533..45679999****9999999..666655..9***********************987777..88 PP

                      EEE- CS
               B3  95 kvfr 98 
                       ++r
  Zosma25g00280.1 151 YIVR 154
                      8776 PP
2B348.31.8e-15268360199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k + ++    +++l lp +f++e+  +k e+++++l d +++s++  +i++ ++++ +lt GW+eF+  +gL e D ++F+l+++++f  +v
  Zosma25g00280.1 268 FIKLM-QHPKDVKSWLELPHSFCKENL-PK-ENTKMILIDDTSNSFKTVFIFSTTGEG-LLTLGWQEFCAFHGLIEDDALIFHLVNSTTF--KV 355
                      55555.444445568********9995.33.5569***************99999887.79**********************9986777..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      +++r+
  Zosma25g00280.1 356 HILRA 360
                      99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-2058155IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1659155IPR015300DNA-binding pseudobarrel domain
CDDcd100179.56E-1963154No hitNo description
PfamPF023621.9E-1065154IPR003340B3 DNA binding domain
SMARTSM010191.5E-1565156IPR003340B3 DNA binding domain
PROSITE profilePS5086310.12365156IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-18261361IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-19263361IPR015300DNA-binding pseudobarrel domain
CDDcd100173.93E-15266359No hitNo description
PROSITE profilePS5086310.856267361IPR003340B3 DNA binding domain
PfamPF023622.5E-13268360IPR003340B3 DNA binding domain
SMARTSM010191.5E-12268361IPR003340B3 DNA binding domain
Gene3DG3DSA:3.30.40.102.0E-4410462IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139203.4E-9425462No hitNo description
PROSITE profilePS5008910.498426461IPR001841Zinc finger, RING-type
CDDcd001620.00252426462No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MQTKPCGVQK GKMALNPKEA TLDKQTMKRK RILDNRVYAS EEARIYAIER AREIQTGLDS  60
KYPSFIKSMS QSHVTGGFWL GLPSHFCVKY LPDEDTRFSL IDENFKESTS LFLPNRSGLS  120
AGWRGFSIEH GLVDGDAVVF HLIKQTTFKV YIVRSGDLVS CITETKKTPT LPKKEDQHLK  180
TVKKASSPLE STQKEKNDSS CPSSIPLKYA NYERINSDKI SFHEDQINNS DSDKSLLNQP  240
NHPSKLKKEM EKKAKGFQSK LDEAFPSFIK LMQHPKDVKS WLELPHSFCK ENLPKENTKM  300
ILIDDTSNSF KTVFIFSTTG EGLLTLGWQE FCAFHGLIED DALIFHLVNS TTFKVHILRA  360
KDDFSSTAPN DNKIKSEIEE PTIIGHLSSS DKNYSCDIYM KLEEELKQKT MEVERTTELF  420
HSFKSCKVCM EREMAMLLLP CMHLCLCKNC EPRFNICPIC NTGKVSSVQV FLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028777057.13e-52LOW QUALITY PROTEIN: B3 domain-containing protein At3g19184-like
RefseqXP_028789596.13e-52B3 domain-containing protein At3g19184-like
TrEMBLA0A0K9PHG10.0A0A0K9PHG1_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.19e-51B3 family protein