PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma25g00360.1
Common NameZOSMA_25G00360
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 137aa    MW: 15406.1 Da    PI: 4.7014
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma25g00360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-18651251
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaark 51
                     +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++
  Zosma25g00360.1  6 RYRGVRQRH-WGSWVSEIRHP-----LlkTRVWLGTFETAEDAARAYDEAAR 51
                     69******9.**********8.....334*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.77E-32565No hitNo description
Gene3DG3DSA:3.30.730.105.0E-34663IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-21664IPR016177DNA-binding domain
SMARTSM003807.8E-40669IPR001471AP2/ERF domain
PfamPF008471.3E-11654IPR001471AP2/ERF domain
PROSITE profilePS5103221.167663IPR001471AP2/ERF domain
PRINTSPR003671.8E-11718IPR001471AP2/ERF domain
PRINTSPR003671.8E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MPRMQRYRGV RQRHWGSWVS EIRHPLLKTR VWLGTFETAE DAARAYDEAA RWMCGPRAKT  60
NFPYDPNAST NSSALSTSLL AKLEKCCAGT AGAEGVKTND GGDMEEETNQ NQMDDECIEE  120
MIEEMRYYGS IEINSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-18568468ATERF1
3gcc_A5e-18568468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008779295.15e-59ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW53e-51ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0K9PFB53e-98A0A0K9PFB5_ZOSMR; Uncharacterized protein
STRINGXP_008779295.12e-58(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-30ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]