PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma25g00430.1
Common NameZOSMA_25G00430
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 107aa    MW: 12232.3 Da    PI: 10.4779
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma25g00430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.23.2e-223788155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     k rl+Wt++LH++Fv+a++ + G++  +P+til++m+v +Lt e+v+SHLQkYRl
  Zosma25g00430.1 37 KSRLKWTKQLHRQFVKAISII-GID--IPRTILDVMQVRDLTKEQVASHLQKYRL 88
                     68*******************.998..9**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.1193491IPR017930Myb domain
SuperFamilySSF466892.69E-163592IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-223692IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-213789IPR006447Myb domain, plants
PfamPF002491.9E-63987IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MILSLNSDSN IGNYRKRVIT HCECDEDVID DIQGFKKSRL KWTKQLHRQF VKAISIIGID  60
IPRTILDVMQ VRDLTKEQVA SHLQKYRLKL RKLTSSFGNG MGTSIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797975.14e-21two-component response regulator EHD1-like isoform X2
SwissprotQ7Y0W32e-18EHD1_ORYSI; Two-component response regulator EHD1
TrEMBLA0A0K9PFE81e-71A0A0K9PFE8_ZOSMR; Uncharacterized protein
STRINGSb01g019980.15e-19(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112222741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-18response regulator 2