PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma25g01260.1
Common NameZOSMA_25G01260
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 192aa    MW: 21260.3 Da    PI: 10.5761
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma25g01260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.7e-20111160255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p+    + +r++lg+f taeeAa  +++a+ +++g
  Zosma25g01260.1 111 NYRGVRRRP-WGKWVAEIRNPK----QaTRVWLGTFETAEEAALSYDRAAIEFHG 160
                      59*******.**********94....46*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-31111168IPR001471AP2/ERF domain
CDDcd000189.96E-35111167No hitNo description
PROSITE profilePS5103224.012111168IPR001471AP2/ERF domain
PfamPF008472.4E-14111160IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-22111169IPR016177DNA-binding domain
SMARTSM003801.0E-36111174IPR001471AP2/ERF domain
PRINTSPR003679.7E-12112123IPR001471AP2/ERF domain
PRINTSPR003679.7E-12134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MVGQKSNIPK SKPLPSLPII PEESPFPPLS PSLPIIPSLP PLSPLQPFGM TLDQESSIIT  60
STLLHIISNY TTPAPVIPIP RSTAVEGESD REKNNRGNNS DNFKKKKKKK NYRGVRRRPW  120
GKWVAEIRNP KQATRVWLGT FETAEEAALS YDRAAIEFHG PRAKLNFSPT LDRGGERSET  180
TTAMFPEFKG S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-23108167262ATERF1
3gcc_A5e-23108167262ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103109KKKKKKK
2103117KKKKKKKNYRGVRRR
3104118KKKKKKNYRGVRRRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020080968.13e-33ethylene-responsive transcription factor ERF109-like
TrEMBLA0A0K9PFL21e-135A0A0K9PFL2_ZOSMR; Uncharacterized protein
STRINGMLOC_67996.17e-33(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.19e-29related to AP2 6l