PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma25g01410.1
Common NameZOSMA_25G01410
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 300aa    MW: 33528 Da    PI: 6.5307
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma25g01410.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.89.1e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE++ l+ +++++G g W+tI +          R+  ++k++w++
  Zosma25g01410.1  5 KQKWTAEEELALKAGIEKHGAGKWRTILKDPEfshilYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.564161IPR017930Myb domain
SuperFamilySSF466891.87E-15267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-13456IPR009057Homeodomain-like
SMARTSM007175.2E-7459IPR001005SANT/Myb domain
PfamPF002491.7E-8555IPR001005SANT/Myb domain
CDDcd116601.61E-18656No hitNo description
Gene3DG3DSA:1.10.10.101.1E-16117185IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.8E-16117182IPR005818Linker histone H1/H5, domain H15
CDDcd000736.42E-11117180No hitNo description
SuperFamilySSF467858.16E-18117193IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150426.287119187IPR005818Linker histone H1/H5, domain H15
PfamPF005381.1E-12121180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGAPKQKWTA EEELALKAGI EKHGAGKWRT ILKDPEFSHI LYLRSNVDLK DKWRNMSVTS  60
HDWGSRDRPR ISWKRTQQVH RHDNSLALST VDEDIDDEIV DVNPLAISDE ILQIPNTSSI  120
PRLDDIVLEA ITNLKDPTGS SMTAIAMYIE EEYWSPPNLE SMLSAKLKAL TSNGKLIKVK  180
RKYRITPVFG FSSRRSSRKL PIEGKQKELI KPERRDFKAH PKYQIDAEIA RMRSMSSHEA  240
AAVAAQAMIE AEAAIAEAEE AAREAEIAEA DAEAAHAFAE AAKLTLKNRA TDGLSMQES*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784788.11e-103single myb histone 6-like
RefseqXP_008784789.11e-103single myb histone 6-like
RefseqXP_008784790.11e-103single myb histone 6-like
SwissprotC0HIA32e-75SMH6_MAIZE; Single myb histone 6
TrEMBLA0A0K9PHQ20.0A0A0K9PHQ2_ZOSMR; Putative Histone H1.1
STRINGXP_008784788.11e-102(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-71telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]