PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma261g00260.1

Common Name

ZOSMA_261G00260

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 205aa MW: 23573.9 Da PI: 8.5811

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma261g00260.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.9	1.4e-07	2	62	31	90
FAR1 31 rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +++ Csk+g+++ t+ +rr++ ++r gC ++k k+ + +++w+ +++ HnH+++ Zosma261g00260.1 2 KRLLCSKQGSPSLILPPTNGNRRKNGVSRYGCLESIKFKRINrSDNWVTDTVIFYHNHPFT 62 6899******9999999*****************999*************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MKRLLCSKQG SPSLILPPTN GNRRKNGVSR YGCLESIKFK RINRSDNWVT DTVIFYHNHP 60 FTTPSKIRYL PINRSISQTS KLLFSSLAEV NVPVSQQAAY FSNQPGGVQN MGCMKMVINN 120 MVRDDRIDLK NYDVDLIVEE FEMNKSENEE FFYDLVKDDE GRLKHLFWAD PTMIENYKLF 180 GNSVTFDTTY KTNVYSMVFG IFCG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PFA9	1e-151	A0A0K9PFA9_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-21	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma261g00260.1