PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma264g00270.1
Common NameZOSMA_264G00270
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family YABBY
Protein Properties Length: 184aa    MW: 20457.5 Da    PI: 9.7364
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma264g00270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY217.93.1e-6741624170
             YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                         +++ vCyv+CnfCnt+lavsvP + lf++vtvrCGhC++llsvn+  + q+++ +  l+++ + +  e    ++++  +++++ +  s+++
  Zosma264g00270.1   4 EIAADFVCYVHCNFCNTVLAVSVPCNNLFNMVTVRCGHCSNLLSVNMGGKLQIIPPHV-LQNNSNMKSPEYGLEHGSSSAKYYHRMSILSQHN 95 
                       567899*******************************************999998765.3444333333333333333333333333333333 PP

             YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       ss+        e +r+ p i PPekrqr+Psaynrfikeeiqrika+nPdi+hreafsaaaknWahfP+ihfgl
  Zosma264g00270.1  96 SSSL------MEKQRIVP-IAPPEKRQRAPSAYNRFIKEEIQRIKANNPDITHREAFSAAAKNWAHFPRIHFGL 162
                       3322......22233334.89***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-707162IPR006780YABBY protein
SuperFamilySSF470955.24E-999155IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.5E-5111156IPR009071High mobility group box domain
CDDcd013904.64E-6116152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSFEIAADFV CYVHCNFCNT VLAVSVPCNN LFNMVTVRCG HCSNLLSVNM GGKLQIIPPH  60
VLQNNSNMKS PEYGLEHGSS SAKYYHRMSI LSQHNSSSLM EKQRIVPIAP PEKRQRAPSA  120
YNRFIKEEIQ RIKANNPDIT HREAFSAAAK NWAHFPRIHF GLTLEAKNQM KSSIAAAAEG  180
GRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778120.11e-73protein YABBY 2-like
RefseqXP_009792035.11e-73PREDICTED: axial regulator YABBY 5-like isoform X3
SwissprotQ10FZ74e-61YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A0K9PEQ01e-134A0A0K9PEQ0_ZOSMR; Protein YABBY 2
STRINGXP_008778120.15e-73(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-63YABBY family protein